4. Zeobuilder Tutorial – Getting started

• 4.1. Introduction
  • 4.1.1. How to read this tutorial
• 4.2. Getting started
  • 4.2.1. Installation
  • 4.2.2. Starting Zeobuilder
  • 4.2.3. The Zeobuilder GUI
  • 4.2.4. The anatomy of a Zeobuilder model
  • 4.2.5. Tree structure terminology
  • 4.2.6. Selections
  • 4.2.7. Selections in the 3D view
  • 4.2.8. Menu functions that alter the current selection
  • 4.2.9. The relevance of making proper selections
  • 4.2.10. Adding and removing objects, fixing mistakes
  • 4.2.11. Default units
  • 4.2.12. Rotations and Translations
  • 4.2.13. Moving the global rotation center, zooming in and out
  • 4.2.14. Configuring the interactive functions
  • 4.2.15. Changing properties of objects
  • 4.2.16. Cut, Copy, Paste and Duplicate
  • 4.2.17. Loading and Saving files
  • 4.2.18. Import and Export
  • 4.2.19. Concluding remarks
• 4.3. Common tasks
  • 4.3.1. Adding bonds to the model
  • 4.3.2. Internal rotations
  • 4.3.3. Pseudo rotations
  • 4.3.4. Advanced selections
• 4.4. Measurements
  • 4.4.1. The Interactive measurement tool
  • 4.4.2. Chemical formula
  • 4.4.3. Statistical analysis of internal coordinates
• 4.5. Working with springs
  • 4.5.1. A basic example: aligning two THF molecules
  • 4.5.2. The condensation of two zeolite building blocks
  • 4.5.3. Technical details
  • 4.5.4. Exercises
• 4.6. Periodic models
  • 4.6.1. Visualization
  • 4.6.2. The empty periodic model
  • 4.6.3. Transformation of a periodic model into a cluster
  • 4.6.4. Transformation of a cluster model into a periodic one
  • 4.6.5. The super cell
  • 4.6.6. Unit cell reduction