Index

A

add_term() (quickff.valence.ValenceFF method) apply_constraints() (quickff.valence.ValenceFF method)

average() (in module quickff.tools) average_pars() (quickff.program.BaseProgram method)

B

BaseProgram (class in quickff.program)

boxqp() (in module quickff.tools)

C

check_params() (quickff.valence.ValenceFF method)

D

DeriveFF (class in quickff.program) digits() (in module quickff.tools) do_bendclin() (quickff.program.BaseProgram method) do_cross_init() (quickff.program.BaseProgram method) do_eq_setrv() (quickff.program.BaseProgram method) do_hc_estimatefc() (quickff.program.BaseProgram method)

do_pt_estimate() (quickff.program.BaseProgram method) do_pt_generate() (quickff.program.BaseProgram method) do_pt_postprocess() (quickff.program.BaseProgram method) do_sqoopdist_to_oopdist() (quickff.program.BaseProgram method) do_squarebend() (quickff.program.BaseProgram method) dump_charmm22_prm() (in module quickff.io) dump_charmm22_psf() (in module quickff.io)

E

energy() (quickff.reference.SecondOrderTaylor method)

estimate() (quickff.cost.HessianFCCost method)

F

fitpar() (in module quickff.tools)

G

get_ei_ff() (in module quickff.reference) get_ei_radii() (in module quickff.tools) get_hessian_contrib() (quickff.valence.ValenceFF method) get_multiplicity() (in module quickff.tools)

get_restvalue() (in module quickff.tools) global_rotation() (in module quickff.tools) global_translation() (in module quickff.tools) gradient() (quickff.reference.SecondOrderTaylor method)

H

hessian() (quickff.reference.SecondOrderTaylor method)

HessianFCCost (class in quickff.cost)

I

init_bend_terms() (quickff.valence.ValenceFF method) init_bond_terms() (quickff.valence.ValenceFF method) init_cross_angle_terms() (quickff.valence.ValenceFF method) init_cross_dihed_terms() (quickff.valence.ValenceFF method)

init_dihedral_terms() (quickff.valence.ValenceFF method) init_oop_terms() (quickff.valence.ValenceFF method) is_negligible() (quickff.valence.ValenceFF method) iter_masters() (quickff.valence.ValenceFF method) iter_terms() (quickff.valence.ValenceFF method)

M

make_output() (quickff.program.BaseProgram method)

MakeTrajectories (class in quickff.program) modify_term() (quickff.valence.ValenceFF method)

P

plot() (quickff.perturbation.Trajectory method) plot_trajectories() (quickff.program.BaseProgram method)

PlotTrajectories (class in quickff.program) print_system() (quickff.program.BaseProgram method)

Q

quickff.cost (module) quickff.io (module) quickff.perturbation (module) quickff.program (module)

quickff.reference (module) quickff.settings (module) quickff.tools (module) quickff.valence (module)

R

read_abinitio() (in module quickff.io)

reset_system() (quickff.program.BaseProgram method) run() (quickff.program.BaseProgram method)

S

SecondOrderTaylor (class in quickff.reference)

set_ffatypes() (in module quickff.tools) Settings (class in quickff.settings)

T

term_sort_atypes() (in module quickff.tools)

to_xyz() (quickff.perturbation.Trajectory method) Trajectory (class in quickff.perturbation)

U

update() (quickff.reference.SecondOrderTaylor method)

update_cross_pars() (quickff.program.BaseProgram method) update_trajectory_terms() (quickff.program.BaseProgram method)

V

ValenceFF (class in quickff.valence)

VASPRun (class in quickff.io)

W

write_trajectories() (quickff.program.BaseProgram method)

Y

YaffForceField (class in quickff.reference)