..
    : TAMkin is a post-processing toolkit for normal mode analysis, thermochemistry
    : and reaction kinetics.
    : Copyright (C) 2008-2012 Toon Verstraelen <Toon.Verstraelen@UGent.be>, An Ghysels
    : <An.Ghysels@UGent.be> and Matthias Vandichel <Matthias.Vandichel@UGent.be>
    : Center for Molecular Modeling (CMM), Ghent University, Ghent, Belgium; all
    : rights reserved unless otherwise stated.
    :
    : This file is part of TAMkin.
    :
    : TAMkin is free software; you can redistribute it and/or
    : modify it under the terms of the GNU General Public License
    : as published by the Free Software Foundation; either version 3
    : of the License, or (at your option) any later version.
    :
    : In addition to the regulations of the GNU General Public License,
    : publications and communications based in parts on this program or on
    : parts of this program are required to cite the following article:
    :
    : "TAMkin: A Versatile Package for Vibrational Analysis and Chemical Kinetics",
    : An Ghysels, Toon Verstraelen, Karen Hemelsoet, Michel Waroquier and Veronique
    : Van Speybroeck, Journal of Chemical Information and Modeling, 2010, 50,
    : 1736-1750W
    : http://dx.doi.org/10.1021/ci100099g
    :
    : TAMkin is distributed in the hope that it will be useful,
    : but WITHOUT ANY WARRANTY; without even the implied warranty of
    : MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    : GNU General Public License for more details.
    :
    : You should have received a copy of the GNU General Public License
    : along with this program; if not, see <http://www.gnu.org/licenses/>
    :
    : --

Input/output
============

.. automodule:: tamkin.io
   :members:

Tools to read data from general packages
----------------------------------------

CHARMM
~~~~~~

.. automodule:: tamkin.io.charmm
   :members:

CP2K
~~~~

.. automodule:: tamkin.io.cp2k
   :members:

CPMD
~~~~

.. automodule:: tamkin.io.cpmd
   :members:

Gaussian 03/09
~~~~~~~~~~~~~~

.. automodule:: tamkin.io.gaussian
   :members:

QChem
~~~~~

.. automodule:: tamkin.io.qchem
   :members:

VASP
~~~~

.. automodule:: tamkin.io.vasp
   :members:


File formats specific for TAMkin
---------------------------------

.. automodule:: tamkin.io.internal
   :members:

Tools to generate trajectories
------------------------------

.. automodule:: tamkin.io.trajectory
   :members: